2016

1.   Arango-Argoty, G.; Singh, G.; Heath, L.S.; Pruden, A.; Xiao, W.D.; Zhang, L.Q., Metastorm: A Public Resource for Customizable Metagenomics Annotation. Plos One 2016, 11, (9).

2017

2.   Garner, E.; Benitez, R.; von Wagoner, E.; Sawyer, R.; Schaberg, E.; Hession, W.C.; Krometis, L.A.H.; Badgley, B.D.; Pruden, A., Stormwater Loadings of Antibiotic Resistance Genes in an Urban Stream. Water Research 2017, 123, 144-152.

3.   Li, L.L.; Yu, P.F.; Wang, X.F.; Yu, S.S.; Mathieu, J.; Yu, H.Q.; Alvarez, P.J.J., Enhanced Biofilm Penetration for Microbial Control by Polyvalent Phages Conjugated with Magnetic Colloidal Nanoparticle Clusters (CNCs). Environmental Science-Nano 2017, 4, (9), 1817-1826.

4.   Riquelme, M.V.; Leng, W.N.; Carzolio, M.; Pruden, A.; Vikesland, P., Stable Oligonucleotide-Functionalized Gold Nanosensors for Environmental Biocontaminant Monitoring. Journal of Environmental Sciences-China 2017, 62, 49-59.

5.   Vikesland, P.J.; Pruden, A.; Alvarez, P.J.J.; Aga, D.; Burgmann, H.; Li, X.D.; Manaia, C.M.; Nambi, I.; Wigginton, K.; Zhang, T.; Zhu, Y.G., Toward a Comprehensive Strategy to Mitigate Dissemination of Environmental Sources of Antibiotic Resistance. Environmental Science & Technology 2017, 51, (22), 13061-13069.

6.   Wei, H.R.; McCarthy, A.; Song, J.; Zhou, W.; Vikesland, P.J., Quantitative SERS by Hot Spot Normalization - Surface Enhanced Rayleigh Band Intensity as an Alternative Evaluation Parameter for SERS Substrate Performance. Faraday Discussions 2017, 205, 491-504.

7.   Yu, P.F.; Mathieu, J.; Lu, G.W.; Gabiatti, N.; Alvarez, P.J., Control of Antibiotic-Resistant Bacteria in Activated Sludge Using Polyvalent Phages in Conjunction with a Production Host. Environmental Science & Technology Letters 2017, 4, (4), 137-142.

8.   Yu, P.F.; Mathieu, J.; Yang, Y.; Alvarez, P.J.J., Suppression of Enteric Bacteria by Bacteriophages: Importance of Phage Polyvalence in the Presence of Soil Bacteria. Environmental Science & Technology 2017, 51, (9), 5270-5278.

2018

9.   Angeles, L.F.; Aga, D.S., Establishing Analytical Performance Criteria for the Global Reconnaissance of Antibiotics and Other Pharmaceutical Residues in the Aquatic Environment Using Liquid Chromatography-Tandem Mass Spectrometry. Journal of Analytical Methods in Chemistry 2018. [http://dx.doi.org/10.1155/2018/7019204]

10. Arango-Argoty, G.; Garner, E.; Prudent, A.; Heath, L.S.; Vikesland, P.; Zhang, L.Q., DeepARG: A Deep Learning Approach for Predicting Antibiotic Resistance Genes from Metagenomic Data. Microbiome 2018, 6.

11. Burgmann, H.; Frigon, D.; Gaze, W.H.; Manaia, C.M.; Pruden, A.; Singer, A.C.; Smets, B.F.; Zhang, T., Water and Sanitation: An Essential Battlefront in the War on Antimicrobial Resistance. FEMS Microbiology Ecology 2018, 94, (9).

12. Gabiatti, N.; Yu, P.F.; Mathieu, J.; Lu, G.W.; Wang, X.F.; Zhang, H.J.; Soares, H.M.; Alvarez, P.J.J., Bacterial Endospores as Phage Genome Carriers and Protective Shells. Applied and Environmental Microbiology 2018, 84, (18).

13. Garner, E.; Chen, C.Q.; Xia, K.; Bowers, J.; Engelthaler, D.M.; McLain, J.; Edwards, M.A.; Pruden, A., Metagenomic Characterization of Antibiotic Resistance Genes in Full-Scale Reclaimed Water Distribution Systems and Corresponding Potable Systems. Environmental Science & Technology 2018, 52, (11), 6113-6125.

14. Li, A.D.; Metch, J.W.; Wang, Y.L.; Garner, E.; Zhang, A.N.; Riquelme, M.V.; Vikesland, P.J.; Pruden, A.; Zhang, T., Effects of Sample Preservation and DNA Extraction on Enumeration of Antibiotic Resistance Genes in Wastewater. FEMS Microbiology Ecology 2018, 94, (2).

15. Oh, M.; Pruden, A.; Chen, C.Q.; Heath, L.S.; Xia, K.; Zhang, L.Q., Metacompare: A Computational Pipeline for Prioritizing Environmental Resistome Risk. FEMS Microbiology Ecology 2018, 94, (7).

16. Pruden, A.; Alcalde, R.E.; Alvarez, P.J.J.; Ashbolt, N.; Bischel, H.; Capiro, N.L.; Crossette, E.; Frigon, D.; Grimes, K.; Haas, C.N.; Ikuma, K.; Kappell, A.; LaPara, T.; Kimbell, L.; Li, M.Y.; Li, X.; McNamara, P.; Seo, Y.; Sobsey, M.D.; Sozzi, E.; Navab-Daneshmand, T.; Raskin, L.; Riquelme, M.V.; Vikesland, P.; Wigginton, K.; Zhou, Z., An Environmental Science and Engineering Framework for Combating Antimicrobial Resistance. Environmental Engineering Science 2018, 35, (10), 1005-1011.

17. Qiao, Z.; Ye, Y.Y.; Chang, P.H.; Thirunarayanan, D.; Wigginton, K.R., Nucleic Acid Photolysis by Uv254 and the Impact of Virus Encapsidation. Environmental Science & Technology 2018, 52, (18), 10408-10415.

18. Thilakarathne, M.; Sridhar, V.; Karthikeyan, R., Spatially Explicit Pollutant Load-Integrated in-Stream E-Coli Concentration Modeling in a Mixed Land-Use Catchment. Water Research 2018, 144, 87-103.

19. Vikesland, P.J., Nanosensors for Water Quality Monitoring. Nature Nanotechnology 2018, 13, (8), 651-660.

20. Wang, X.L.; Yang, F.X.; Zhao, J.; Xu, Y.; Mao, D.Q.; Zhu, X.; Luo, Y.; Alvarez, P.J.J., Bacterial Exposure to ZnO Nanoparticles Facilitates Horizontal Transfer of Antibiotic Resistance Genes. Nanoimpact 2018, 10, 61-67.

21. Wei, H.R.; Leng, W.N.; Song, J.; Willner, M.R.; Marr, L.C.; Zhou, W.; Vikesland, P.J., Improved Quantitative SERS Enabled by Surface Plasmon Enhanced Elastic Light Scattering. Analytical Chemistry 2018, 90, (5), 3227-3237.

22. Willner, M.R.; McMillan, K.S.; Graham, D.; Vikesland, P.J.; Zagnoni, M., Surface-Enhanced Raman Scattering Based Microfluidics for Single-Cell Analysis. Analytical Chemistry 2018, 90, (20), 12004-12010.

23. Yu, P.F.; Zaleski, A.; Li, Q.L.; He, Y.; Mapili, K.; Pruden, A.; Alvarez, P.J.J.; Stadler, L.B., Elevated Levels of Pathogenic Indicator Bacteria and Antibiotic Resistance Genes after Hurricane Harvey's Flooding in Houston. Environmental Science & Technology Letters 2018, 5, (8), 481-486.

2019

24. Garner, E.; Inyang, M.; Garvey, E.; Parks, J.; Glover, C.; Grimaldi, A.; Dickenson, E.; Sutherland, J.; Salveson, A.; Edwards, M.A.; Pruden, A., Impact of Blending for Direct Potable Reuse on Premise Plumbing Microbial Ecology and Regrowth of Opportunistic Pathogens and Antibiotic Resistant Bacteria. Water Research 2019, 151, 75-86.

25. Ju, F.; Beck, K.; Yin, X.L.; Maccagnan, A.; McArdell, C.S.; Singer, H.P.; Johnson, D.R.; Zhang, T.; Burgmann, H., Wastewater Treatment Plant Resistomes Are Shaped by Bacterial Composition, Genetic Exchange, and Upregulated Expression in the Effluent Microbiomes. ISME Journal 2019, 13, (2), 346-360.

26. Mathieu, J.; Yu, P.F.; Zuo, P.X.; Da Silva, M.L.B.; Alvarez, P.J.J., Going Viral: Emerging Opportunities for Phage-Based Bacterial Control in Water Treatment and Reuse. Accounts of Chemical Research 2019, 52, (4), 849-857.

27. Singh, R.R.; Angeles, L.F.; Butryn, D.M.; Metch, J.W.; Garner, E.; Vikesland, P.J.; Aga, D.S., Towards a Harmonized Method for the Global Reconnaissance of Multi-Class Antimicrobials and Other Pharmaceuticals in Wastewater and Receiving Surface Waters. Environment International 2019, 124, 361-369.

28. Vikesland, P.; Garner, E.; Gupta, S.; Kang, S.; Maile-Moskowitz, A.; Zhu, N., Differential Drivers of Antimicrobial Resistance across the World. Accounts of Chemical Research 2019, 52, (4), 916-924.

29. Wei, H.R.; Huang, Q.S.; Vikesland, P.J., The Aromatic Amine pK(a) Determines the Affinity for Citrate-Coated Gold Nanoparticles: In Situ Observation Via Hot Spot-Normalized Surface-Enhanced Raman Spectroscopy. Environmental Science & Technology Letters 2019, 6, (4), 199-204.

30. Wei, H.R.; Leng, W.N.; Song, J.; Liu, C.; Willner, M.R.; Huang, Q.S.; Zhou, W.; Vikesland, P.J., Real-Time Monitoring of Ligand Exchange Kinetics on Gold Nanoparticle Surfaces Enabled by Hot Spot-Normalized Surface-Enhanced Raman Scattering. Environmental Science & Technology 2019, 53, (2), 575-585.